Beast code in Giters

Jochen Weile's repositories

popcodeSuite

POPCode Oligo Design tool and web service

Language:R1 20

screen_pipeline

DMS BarSeq sequence analysis pipeline

Language:R1 20

yogiroc

Simple ROC and PRC curves

Language:RGPL-3.01 10

AssemblyByPacBio

Scripts to assign a barcode to a variable region from PacBio SMRT reads

Language:Python000

maveLLR

Calculate pathogenicity LLRs for MAVE datasets

Language:RGPL-3.0000

yogitools

Yogi Tools, random collection of useful functions

Language:R010

bartender-1.1

This bartender version could handle arbitrary length of barcode

Language:C++MIT000

cgir

CGI scripting in R

Language:R010

crossAlign

Cross-align sequencing run against all possible reference sequences

Language:Shell010

diskCleanup

Language:R000

dmsPipeline

Old RothLab DMS pipeline from 2017

Language:R010

gatherposters

scripts for processing images for poster sessions in gather town

Language:R020

harness

Test harness for Probabilistic Network Integration Algorithms

Language:JavaLGPL-3.0000

jweile.github.io

Language:HTML020

kiloseq

KiloSeq sequencing analysis pipeline

Language:R000

lore

A Semantic Data Integration Framework

Language:Java020

maveclin

R package for clinical assessment of MaveDB data

Language:RAGPL-3.0000

mthfrModel

Language:R020

PacRAT

Improving long-read barcode-variant mapping using multiple sequence alignment.

Language:PythonMIT000

rlogo

basic weblogo tool for R

Language:R010

thesis

PhD thesis

Language:TeX000

tileseq_mutcount

Re-implement TileSeq mutation counts in python

Language:PythonMIT000

tmcurator

A textmining curation system for the RothLab

Language:Java020

transnet

Semantic functionalities for the Synergizer project

Language:Java000

yogilog

simple r logger

Language:RGPL-3.0000

yogiseq

Language:R020

yogiutil

Miscellaneous useful tools for Java

Language:Java000