jvivian / gene-outlier-detection

A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.

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Accommodate different gene sets in input and background

jvivian opened this issue · comments

Currently if genes are missing in the input that are not in the background the tool will fail if they are selected as part of the background ranking.

Solution is to accommodate this behavior but provide an explicit warning to the user.

This also requires adding a check against an optionally provided gene list