John Vivian's repositories
gene-outlier-detection
A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.
fastq_pair
FASTQ pairing algorithms written in Rust
blog
Repository for posts / code that don't need their own repo
odd-pi
Library for managing Object Detection over Discord using a Raspberry Pi
advent-of-code
Advent of Code challenges
advent-of-code-2018
2018 Advent of Code challenges done in Rust
arrow-dplyr
A quick lightning talk on using arrow and dplyr together
averse
Averse is a recipe store and meal planner written in Rust as an exercise
Bayesian-Outlier-Model
Identify gene outliers from RNA-seq expression
crossword
Crossword generator engine in Python
dotfiles
My dotfiles synced form localhost and remote machines
fastbook
The fastai book, published as Jupyter Notebooks
GPT-From-Scratch
Repository for learning about Attention/Transformer architecture by building one from scratch
jvivian.github.io
Personal Website
Kalman-and-Bayesian-Filters-in-Python
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.
kickstart.nvim
A launch point for your personal nvim configuration
LazyVim
Neovim config for the lazy
py-upset
A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
rnaseq-lib3
RNA-seq convenience library for Python3
Rust-Book-Examples
Code examples from the Rust Book
sd-infinity-grid-generator-script
Infinite-Axis Grid Generator for Stable Diffusion!
sd-stats-dash
Textual-based statistics dashboard
slides
Repository of slides for sharing / historical purposes
statistical-rethinking-pymc3
PyMC3 code and practice problems for Statistical Rethinking
toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
UpSetPlot
Draw UpSet plots with Pandas and Matplotlib