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James van Alstine (jvanalstine)

jvanalstine

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Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.

Language:C++License:Apache-2.0Stargazers:0Issues:0Issues:0

breakseq2

BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants

Language:PythonLicense:BSD-2-ClauseStargazers:0Issues:0Issues:0

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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CNVnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

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gatk

Official code repository for GATK versions 4 and up

Language:JavaLicense:BSD-3-ClauseStargazers:0Issues:0Issues:0

pypgx

A Python package for pharmacogenomics research

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samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

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tern

The SQL Fan's Migrator

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TileDB

The Universal Storage Engine

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TileDB-FastQ

FastQ ingestor using TileDB storage format

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TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.

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