justinashworth

AndroidMol

A GL-enabled 3D protein structure viewer for Android. Currently bare bones. Just loads PDB coordinates and lets you move and zoom in 3D via touchscreen.

cmonkey-python

Python port of cMonkey, a machine-learning based method for clustering

cl_images

I wrote this little cgi to save time clicking links in order to view pics on Craigslist

ja-scripts

pssm--

pssm++: simple, fast, precise identification of close matches to nuclease target sites in nucleotide sequences. Note that github auto-reformats the repository name to 'pssm--'. Which is hilarious.

Pymol-script-repo

Collected scripts for Pymol

PySSM

PySSM: Python user interface for finding close matches to nuclease target sites in nucleotide sequences

fastcluster_mod

fastcluster (http://danifold.net/fastcluster.html) with some added functions for moar fast

fcbs

A c++ implementation of correlation distance-based hierarchical clustering (relying on fastcluster) that also performs efficient bootstrapping on larger datasets that is far faster than R's standard pvclust package. (This involves using a modified pvclust, see pvclust_mod respository)

portal_scripts

pvclust_mod

mod of pvclust R package for major efficiency/speed improvements on large datasets

pymol_scripts