Jun Yu's repositories
Blast2Bam
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
deep-learning-genomics-primer
Contains files for the deep learning in genomics primer.
dicerna-rnaseq
Dicerna-RNA SEQ pipeline based on nf-core
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
fucking-algorithm
刷算法全靠套路，认准 labuladong 就够了！English version supported! Crack LeetCode, not only how, but also why.
html-for-programmers-4360013
This is a repository for the LinkedIn Learning course HTML for Programmers
iLearnPlus
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
it-cert-automation-practice
Google IT Automation with Python Professional Certificate - Practice files
junyu-boston
Config files for my GitHub profile.
machine-learning-engineering-for-production-public
Public repo for DeepLearning.AI MLEP Specialization
nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
nfcore_testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.
nodejs-ex
node.js example
practical-mlops-book
[Book-2021] Practical MLOps O'Reilly Book
recipes-regression-template
Template repo for kickstarting recipes for regression use case
ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers
a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
reproducible_R
A reproducible R project
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
scikit-learn
scikit-learn: machine learning in Python
sklearn-project-template
Machine learning template for projects based on sklearn library.
TransAT
TransAT is a package within the R programming language for converting RefSeq ID to Ensembl transcripts and mapping the genomic position, followed by providing variant allele frequencies and gene annotations.
xzceb-flask_eng_fr
flask_enf_fr