junghyunJJ

marsR

MARS: Leveraging allelic heterogeneity to increase power of association testing

ggmend

GGmend: A Mendelian randomization method for finding gene-on-gene regulatory effects in the presence of unobserved confounders

jjutil

jjutil

dabrp_classnote2

rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

WGCNA_for_dupuytren

WGCNA analysis R code for Integrative Genomic and Transcriptomic Analysis of Genetic Markers in Dupuytren's Disease

BDA_course_Aalto

Bayesian Data Analysis course at Aalto

blood

blood

cell_comp

covid_pipeline

datadriven

data_driven

datasharing

The Leek group guide to data sharing

deep_learning

findr-R

Standalone R package for findr

focus

FOCUS: Fine-mapping Of CaUsal gene Sets

gatkpipeline

gene_lists

List of gene lists for genomic analyses.

iterativeWGCNA

Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.

jaxopt

Hardware accelerated, batchable and differentiable optimizers in JAX.

junghyunJJ.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

makesigmasemiPDRcppGSL

makesigmasemiPDRcppGSL

mnm

matrix normal model

mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

plink2R

Read PLINK BED/BIM/FAM files into R

qiime2

Official repository for the QIIME 2 framework.

recycle.RNA.seq

This project contains the links to the datasets, software and code that was used for our study "ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues"

rethinking-numpyro

Statistical Rethinking (2nd ed.) with NumPyro

shiny-examples

stancon_talks

Materials from Stan conferences

submission_checklist

A checklist to help you avoid all those minor errors when submitting a scientific manuscript