jun-hyeok / GBE3037-41_BME-Probability-and-Stability_2019Spring

SKKU Course - BME Probability and Stability @ 2019Spring

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2019 Spring "Probability and Statistics" at SKKU GBME



Download

You can download the class materials using the following command line.

$ git clone https://github.com/wanirepo/Stats_2019Spring.git

Once you clone the github repository, you can just type the following command to get the updated github repository.

$ git pull

Or you can download the repository as a zip file or you can also use GitHub Desktop. The class materials will be uploaded (e.g., lecture slides, assignments) before each class.

There is a good github tutorial: https://rogerdudler.github.io/git-guide/index.html

What are the aims of this course?

Data are everywhere. Data science already became a key element in many research and industrial areas. The primary aim of this course is to learn basic concepts and skills for data analysis, including concepts of random variables, sampling distributions, hypothesis testing, linear modeling, data visualization, etc., preparing you for your life after the graduation in this data-are-everywhere age. However, this is not the only aim of this class. Statistics goes beyond just data analysis, I believe. Statistics is a way of thinking and reasoning. It helps with scientific reasoning and critical thinking. Thus, I hope this class could provide you with some useful tips for scientific thinking and reasoning. Finally, I'd like to give you some hands-on experience of data analysis through flipped classroom.

Course format (flipped classroom) and expectations

This class uses a flipped classroom format, which is a new way of teaching and learning. Different from the traditional learning environment (passively listening to the lecture in the class and doing homework at home), in the flipped classroom, you will listen to the lecture at home and do homework and practices in the classroom. I personally experienced this format of learning during my PhD (for the Machine Learning class) and deeply enjoyed it. I found the flipped classroom helped students stay engaged and provided a good environment for hands-on experience. For these reasons, I have wanted to do the class with the flipped classroom format. Given that this year will be the first year of trying this new format, the class might not be perfect, but I promise to make the class better and better every year!

I will make and share the lecture videos every week. You should watch the lecture videos before you come to the class. This is crucial because the actual class will be conducted with the assumption that you already watch the video beforehand. If you don't watch the lectures, you might not be able to follow the class. I will help you by making the videos short! They will be short! I promise. Also I will ask some easy questions to students in a random order every class.

The videos will be in English (unless you really want them to be in Korean), but we can use Korean to ask questions and discuss.

We will use piazza as a platform for a class announcement, discussion, and questions.

Textbooks

Main textbook:

"Stats: Data and Models" by De Veaux, Velleman, and Bock

Supplements:

"Statistical Thinking for the 21st Century" by Russ Poldrack Link
"Seeing theory" Link
"The Seven Pillars of Statistical Wisdom" by Stephen M. Stigler Amazon Link
"History of Statistics Reading Group" (CMU) Link

Softwares

Teaching how to use statistics packages or programming is not the main focus of this class. This class is more about statistical methods and theories. However, software packages and computer programming are actually essential in learning statistics. Therefore, I will provide two lectures about new software packages for statistical analysis, JAMOVI and JASP. They are brand-new and open-source tools for statistical analysis. In addition, I might use Matlab, Python, or R sometimes. You can download Matlab through SKKU. Python and R are open-source programming languages. I'm planning to open a new experiment class to teach how to use these tools (maybe next year). Therefore, stay tuned.

TAs

Evaluation

Absolute evaluation will be used for this course.

  1. Attendance (40%)
  2. Participation (including pop-questions) (35%)
  3. Midterm exam (10%)
  4. Final exam (15%)

Schedule

Week Video lectures Class Chapters
Week 1
3/4 V00: Class intro Course overview Survey
3/6 V01: Data Cognitive errors! Ch.1-2
Week 2
3/11 V02: Data visualization Data visualization Ch.3-4
3/13 V03: Comparing distribution
Note: I made both V03 and V04 into one video (accidentally). Watch only 14 mins of the video.
Smoothing, re-expressing data Ch.5
Week 3
3/18 V04: Normal model P-P plot Ch.6
3/20 V05: Scatterplots and correlation
Please complete Quiz
Scatterplots and correlation Ch.7
Week 4
3/25 V06: Linear regression
Please complete Quiz
Regression to the mean Ch.8
3/27 V07: More about regression, re-expressing data
Please complete Quiz
The effects of outlier on the regression Ch.9-10
Week 5
4/1 V08: Sampling
Please complete Quiz
Design experiments! Ch.12-13
4/3 V10: Probability and bayes theorem
Please complete Quiz
Bayes theorem Ch.14-15
Week 6
4/8 V11: Random variables
Please complete Quiz
Random variables Ch.16
4/10 V12: Probability models
Please complete Quiz
Probability models Ch.17
Week 7
4/15 V13: JAMOVI
V14: JASP
JAMOVI and JASP practice in-class video
Link for Data collection
-
4/17 Review
Please post your questions
Q & A -
Week 8
4/22, 24 Mid-term - -
Week 9
4/29 No Video today L14: Sampling distribution, central limit theorem Ch.18
5/1 V15: Confidence interval for proportions
Please complete Quiz
Central limit theorem
Link1 Link2
Wani research slide
Ch.19
Week 10
5/6 No class (어린이날 대체공휴일)
5/8 V16: Hypothesis testing, P-values
Please complete Quiz
Let's watch V17 together V17: Inferences about means
NHST and P-value
Ch.21-22
Week 11
5/13 No class - -
5/15 V18: More about tests and intervals
Please complete Quiz for V18
V19:Comparing groups
Please complete Quiz for V19
Q&A, Confidence interval, T-test I Ch.23-24
Week 12
5/20 V20: Paired t-test
Please complete Quiz
T-test II Ch.25
5/22 No class (festival; 자인전) - -
Week 13
5/27 [V21] Comparing counts lecture and Q&A Ch.26
5/29 V22: Review: Inferences about regression
Please complete Quiz for V22
V23: Analysis of Variance (ANOVA)
Please complete Quiz for V23
Watch the video lecture together and solve quiz together Ch.27-28
Week 14
6/3 V24: Multifactor ANOVA
Please complete Quiz
TBD (led by Lada) Ch.29
6/5 V25: Multiple regression
Quiz for V25
V26: Multiple regression wisdom
Quiz for V26
Review Ch.30-31
Week 15
6/10 Review (led by Hongji)
Link for submitting the review questions
(please complete the submission until Friday 6PM)
- -
6/12 No class - -
Week 16
6/17, 19 Final - -

Note.
I will be out of town on 5/13, 6/10, 6/12 for conferences. Weekly plan described above can be adjusted as our class develops.

About

SKKU Course - BME Probability and Stability @ 2019Spring

https://onedrive.live.com/?id=5B33BCE9D5D760E8%213089

License:GNU General Public License v3.0


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