jump-cellpainting / datasets

Images and other data from the JUMP Cell Painting Consortium

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Create FAQ for the resource

shntnu opened this issue · comments

I'll start this thread for collating FAQs. To get started, let's link out to issues that seem like good additions to the FAQ-to-be

Clarify why some perturbations have many replicates

https://github.com/jump-cellpainting/megamap/issues/8

Clarify that for some plates, we have images but not anything else downstream. These plates failed QC but we kept them because they may be useful for developing QC methods.

Also clarify that the load_data files are the right way to index into the dataset

#72 (comment)

@afermg this is the FAQ issue I mentioned during checkin

@shntnu Is the goal to translate these into an actual FAQ or just to link them?

@shntnu Is the goal to translate these into an actual FAQ or just to link them?

Translate them to an actual FAQ in the JUMP handbook, then close out this issue because we should track it in that repo instead (via PR's each time there is a new Q). What do you think?

I think this is solved by broad.io/jump. I'll close this issue but LMK if there is anything else to be done.