julienlag

Julien Lagarde's repositories

samToPolyA

A utility to call polyA sites based on genome alignments in SAM format

Language:PerlApache-2.03 10

anchorTranscriptsEnds

Prepare a GTF file of mapped transcriptome reads for anchored transcript merging

Language:PerlGPL-3.0100

matchDistribution

Given distinct "subject" (S) and a "target" (T) distributions, this script attempts to mimic T's density by pseudo-randomly sampling from S's population.

Language:PerlApache-2.0100

quickTrackHub

A script to generate a UCSC Genome Track Hub based on a list of files and a JSON track definition file

Language:PerlGPL-3.01 1 2

buildLoci

Build gene loci out of sets of overlapping transcripts

Language:PerlGPL-3.0010

condaEnvExport

conda environments

010

gffToHash

Converts a GFF file to a multi-dimensional perl hash.

Language:PerlGPL-3.0010

hashToGff

Converts a multidimensional hash, as produced by gffToHash.pm, into an array containing one GFF line per element.

Language:PerlGPL-3.0010

lrgasp-site

LRGASP web site

MIT000

utils

Various software utilities and scripts, mostly written by me

Language:PerlGPL-3.0000