juliangehring

Bootstrap.jl

Statistical bootstrapping library for Julia

MultipleTesting.jl

The MultipleTesting package offers common algorithms for p-value adjustment and combination and more…

SomaticSignatures

The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.

count

Toy project: An efficient "sort x.txt | uniq -c | sort -k1 -rn" in rust

Rariant

The 'Rariant' package identifies single nucleotide variants based on the difference of binomially distributed mismatch rates between tumor and control samples.

HighSpeedStats

Efficient statistical implementations for high throughput data analysis in R

basespace-help

BaseSpace Docs Repo

bat

A cat(1) clone with wings.

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

BLAKE3

the official Rust and C implementations of the BLAKE3 cryptographic hash function

cli-wg

CLI working group

cyvcf2

cython + htslib == fast VCF and BCF processing

Documenter.jl

A documentation generator for Julia.

hashbrown

Rust port of Google's SwissTable hash map

htslib

C library for high-throughput sequencing data formats

itty-router-openapi

OpenAPI 3 schema generator and validator for Cloudflare Workers

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

noodles

Bioinformatics I/O libraries in Rust

Polaris

Data and information about the Polaris study

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

rust

Empowering everyone to build reliable and efficient software.

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-bio.github.io

Github pages for Rust-Bio

rust-by-example

Learn Rust with examples (Live code editor included)

rust-cookbook

https://rust-lang-nursery.github.io/rust-cookbook

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sccache

sccache is ccache with cloud storage

SomaticCancerAlterations

starship

☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!