Jules Jacobsen's repositories
billion-row-challenge
Code experiments related to 1brc
biohackathon-projects-2021
For BioHackathon Europe 2021.
CuratorModel
A journal-centric model of UniProt for linking journal-derived data to protein sequences.
curie-util
Java utility library to translate CURIEs to IRIs and vice-versa.
normalise-allele
A standalone library for minimising alleles to VCF standard
phenopacket-reference-implementation
Reference java implementation for phenopackets
vmc-kotlin
A kotlin flavoured VMC implementation
exomiser_allele_store
Experimental project for parsing and sorting large numbers of alleles.
gregor
A refactor of Jannovar's mendel and pedigree packages
jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
linkml-java-model
A Java implementation of the LinkML model
mybiocaddie
Template for generating your own mycaddie metadata repo
obographs
Basic and Advanced OBO Graphs: specification and reference implementation
pedigree
Repository for the family history/pedigree project
PhenoDigm2
A Java library for accessing PhenoDigm data
phenogrid
The phenogrid widget
phenopacket-tools
Multimodule Java library/app that implements the "streamlined builder" code, v1 to v2 converter app
ristretto
Compressed Sparse Row (CSR) graph implementation for Ontologies
smhasher
Automatically exported from code.google.com/p/smhasher
variantkey
Numerical Encoding for Human Genetic Variants