juhaa

dREG_analysis

Scripts and instructions for running dREG

anndata

Annotated data.

arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

docker-library

Collection of Dockerfiles

Fast-data-portals-for-scRNAseq-data

genimpute

Portable genotype imputation pipeline used by the eQTL Catalogue

HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

ida-backup

ida2-command-line-tools

Command line tools for interacting with v2 of the IDA research data storage service

Macbook-setup

To Do -list for a new Macbook

pyVDJ

V(D)J sequencing data analysis

qcnorm

This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes

qtlmap

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

random-scripts

regenie-pipelines

WDL pipelines for running regenie

rnaseq

RNA-seq quantification pipeline used by the eQTL Catalogue

scDD

R package to identify genes with differential distributions in single-cell RNA-seq

SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

VarID_analysis

VarID analysis of murine hematopoietic progenitors and intestinal epithelial cells. VarID is part of RaceID v0.1.4