juanmirocks / SETH

Simple fork of SETH (SNP Extraction Tool for Human Variations)

This code is not intended for public use.

Fork of SETH with some few modifications that were necessary for the development and evaluation of nala.

The relevant modifications were done to the file SETHNERAppMut to:

• Allow running the method as a simple REST API server
• Write the output in brat format

Build

mvn clean compile assembly:single

For simplification, add the generated jar temporallily to your CLASSPATH, as in:

CLASSPATH=$CLASSPATH:${SETH_FOLDER}/target/seth-1.3-Snapshot-juanmirocks-jar-with-dependencies.jar

Run

• REST API server, example: java seth.ner.wrapper.SETHNERAppMut -p 8000