juadiegaitan

shiny_popgen

Shiny apps for teaching Population Genetics

30DayMapChallenge

🌍 My contributions to the #30DayMapChallenge 2019

AdmixTools

Tools test whether admixture occurred and more

ansible-playbook-r

An Ansible Playbook to deploy RStudio Server

biobakery

bioBakery tools for meta'omic profiling

bioinformatics-workbook

Bioinformatics Workbook repository

cheatsheets

RStudio Cheat Sheets

course-starter-python

👩‍🏫🐍 Starter repo for building interactive Python courses

curveball

Predicting microbial growth in a mixed culture from growth curve data

dea-notebooks

Repository for Digital Earth Australia Jupyter Notebooks: tools and workflows for geospatial analysis with Open Data Cube and xarray

EMBO_popgen

ffq

A tool to find sequencing data and metadata from public databases.

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

ggsignif

Easily add significance brackets to your ggplots

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

iBEERlab

Website for the Integrative Biology & Evolutionary Ecology Research group

IsoSeq

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

MediasiteDownloader

A Bookmarklet (Favelet) for your browser to simply download lectures from a SonicFoundry Mediasite website, that is often used by colleges and universities.

MitoHiFi

Find, circularise and annotate mitogenome from PacBio assemblies

performr

RAD_analysis_workflow

A bioinformatics protocol for analysing genotypes using restriction site associated DNA sequencing data

RNAseq_nonmodel

rtrees

An R package to facilitate deriving phylogenies from mega-trees.

SATC

Sex assignment through coverage

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

UnderTheRug

Repo for "Evolution on rugged adaptive landscapes"

WebPlotDigitizer

HTML5 based online tool to extract numerical data from plot images.

workflow_demo

This repository is intended to use as a demo about how I organize my research projects: from data to manuscript.

workshop-template

The Carpentries Workshop Template