jtnedoctor's repositories
8812au-20210629
Linux Driver for USB WiFi Adapters that are based on the RTL8812AU Chipset - v5.13.6
Bioinforbricklayer
Learning materials, files and codes for bioinformatics
brainconn
Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
CAMERA
Mendelian Randomization approach using Cross Ancestral Model
CTGCatalog
A collection of commonly used resources for complex trait genetics.
doc-ANNOVAR
Documentation for the ANNOVAR software
fsbrain
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
G4-miner
Direct genome-wide identification of G-quadruplex structures by whole-genome resequencing
Get_MR
A package for running MR In batches and in parallel quickly
ggsegExtra
Repository for extra atlases for the ggseg-package
gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
HDL
High-definition likelihood inference of genetic correlations (HDL)
Intro-to-ChIPseq
Intro to ChIPseq using HPC
LOGODetect
LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
MetaXcan
MetaXcan software and manuscript
mixer
Causal Mixture Model for GWAS summary statistics
nlmr
Non-linear Mendelian randomization
paper-reading
深度学习经典、新论文逐段精读
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
plaac
Prion-Like Amino Acid Composition
post-GWAS-pipeline
A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
PRScs
Polygenic prediction via continuous shrinkage priors
PRSice
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
RNHANES
R package for accessing and analyzing CDC NHANES data
stairway-plot-v2
The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.
vcf2tsvpy
Genomic VCF to tab-separated values