John St. John's repositories
IntroToStatisticalLearningR-
Work on Introduction to Statistical Learning
swift-c-htslib
Ultra-light HTSLIB wrapper for swift, currently just a modulemap giving you access to the C functions.
swift-c-htslib-example
Example swift package built against CHTSLib
signalstepdetector
Automatically exported from code.google.com/p/signalstepdetector
bayesian-machine-learning
Notebooks related to Bayesian methods for machine learning
cyber-dojo
Free in-browser coding-dojo, running live at
deepomics
deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
dnc
A TensorFlow implementation of the Differentiable Neural Computer.
DNC-tensorflow
A TensorFlow implementation of DeepMind's Differential Neural Computers (DNC)
docker-formula
Install and set up Docker
enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
fonolo4android-lite
Automatically exported from code.google.com/p/fonolo4android-lite
genefamilyfinder
Automatically exported from code.google.com/p/genefamilyfinder
latent-diffusion
High-Resolution Image Synthesis with Latent Diffusion Models
NeMo
NeMo: a framework for generative AI
playground
Play with neural networks!
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
pyston
An open-source Python implementation using JIT techniques.
pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
pytorch-lightning
The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.
pytorch-optimizer
torch-optimizer -- collection of optimizers for Pytorch
quotebookr
Automatically exported from code.google.com/p/quotebookr
scVI-dev
Development branch of the scVI project in PyTorch
x-transformers
A simple but complete full-attention transformer with a set of promising experimental features from various papers