Josh Siegle (jsiegle)

jsiegle

Geek Repo

Company:Allen Institute for Brain Science

Location:Seattle

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Organizations
moorelab
open-ephys

Josh Siegle's starred repositories

viztracer

VizTracer is a low-overhead logging/debugging/profiling tool that can trace and visualize your python code execution.

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movement

Python tools for analysing body movements across space and time

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Kilosort

Fast spike sorting with drift correction for up to a thousand channels

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rxRust

Rust implementation of Reactive Extensions.

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iblatlas

IBL atlas module

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datamapplot

Creating beautiful plots of data maps

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AmadeusGPT

We turn natural language descriptions of behaviors into machine-executable code

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pyapp

Runtime installer for Python applications

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FastUI

Build better UIs faster.

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marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

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spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

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fastplotlib

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

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spiketag

Next generation of spike sorting package for BMI

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DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

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reuron

A biologically realistic neural network simulator

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labgraph

LabGraph is a Python framework for rapidly prototyping experimental systems for real-time streaming applications. It is particularly well-suited to real-time neuroscience, physiology and psychology experiments.

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NeuralWaveMachines

Official Implementation of the ICML 2023 paper: "Neural Wave Machines: Learning Spatiotemporally Structured Representations with Locally Coupled Oscillatory Recurrent Neural Networks"

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ultralight-juce

Integrating the Ultralight C++/HTML renderer with JUCE for prettier UIs.

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xbatcher

Batch generation from xarray datasets

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cufflinks

Productivity Tools for Plotly + Pandas

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reactpy

It's React, but in Python

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device.pico

A generic harp device that runs the harp protocol on a raspberry pi pico

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microharp

A Harp protocol and device application framework micropython package.

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imgui_bundle

Dear ImGui Bundle: an extensive set of Ready-to-use widgets and libraries, based on ImGui. Start your first app in 5 lines of code, or less. Whether you prefer Python or C++, this pack has your back!

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anywidget

reusable widgets made easy

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imnodes

A small, dependency-free node editor for dear imgui

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OpenEphysLSL-Inlet

OpenEphys Plugin to retrieve data from an LSL stream.

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imgui-node-editor

Node Editor built using Dear ImGui

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