Jorge Soares's repositories

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Bio-Darkpan-Example

Testing pinto repository

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Bio-GenerateHetSNPAnalysis

Bespoke scripts to back propagate the het snp analysis through all the next gen studies in the PI tracking databases

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Bio-PI-Utils

Isolated scripts to help my day to day PI tasks

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Bio-RNASeq

The new Sanger Pathogen Informatics RNA Seq analysis pipeline

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CPAN-Dark

Manage your own DarkPAN

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Fastaq

Python3 scripts to manipulate FASTA and FASTQ files

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packaging_utils

Utilities to help packaging and maintaining the Debian packages I'm responsible for

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PathFind

Modularised versions of *find scripts

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setup_tracking

setup a vrtracking pipeline

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vr-codebase

The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute

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