This directory contains JSON schemas used to define data for integration into AGR.
Most recent release:
| Schema | Description |
|---|---|
| basicGeneInfoFile | A file of Basic Gene Information objects. This is the base or "root" schema. |
| basicGeneInformation | An entry with Gene information from a MOD. Gene set includes: genes, psuedogenes and not-protein coding genes. It does not include engineered foreign genes, transcripts or other features. |
| dataProvider | An standard set of information regarding data source and taxon ids for the AGR. |
| crossReference | An crossReference entity (e.g.: NCBIGENE links, UniProt Links, and links back to MODs). |
| metaData | An standard set of information regarding when and from whom the load was generated. |
The python script "agr_validate.py" can be used to validate a JSON entry against a schema for testing/development purposes.
Usage is as follows:
agr_validate.py -d test_data.json -s base_schema.json
For the basic Gene info file run
./agr_validate.py -d <gene_file.json> -s basicGeneInfoFile.json
and for the disease info file run
./agr_validate.py -d <disease_file.json> -s disease/diseaseMetaDataDefinition.json
Please use 2 spaces for indentation.