jrijn

Rsome

R package for analyzing qPCR data

cellocity

Scientific software for analysis of confluent cell dynamics.

FijiTools

FijiTools2020 is a collection of tools designed for use in ImageJ/Fiji. The code was written for the analysis of microscopy images in the lab of Mikael Sellin, Uppsala University. Some of the scripts are meant to work in conjunction with a separately performed Trackmate analysis.

get

HACS download script

IJ_analysis_tool

Tools for image analysis in ImageJ

jrijn

Config files for my GitHub profile.

opencv

Getting to know image analysis with opencv and tifffile.

organoid-counter-imagej

Imagej macro for counting the the number of organoids in a brightfield image and measure the area of each object.

python-tools

Assorted python tools

python_pubmed

searching and parsing NCBI Pubmed database

random_thoughts_in_r

Loose R scripts I want to keep as reference.

raspberry_timelapse_LCD

raspi_things

Asorted scripts for the raspberry pi (3)

streamlineR

Variety of tools to steamline R workflows