jrgreen7 / SMIRP

MiRNA Prediction Software

miRNAsuite

####### Scripts #######

build_huntmi_features.py

Adds the seven HuntMi features to each data point in a Micropred feature data file, creating a feature data file which can be used for classification with HuntMi-based classifiers.

Parameters: -i Input file. The file must be in a Micropred feature format, and must be in the 'data' subfolder of the miRNAsuite installation.

Output: A HuntMi feature data file. The filename of the HuntMi file will be the same as the input file, with the extension '.huntmi'.

build_micropred_features.py

Parameters: -i -n

Output:

build_model.py

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build_positiveset.py

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convert_file.py

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cross_validation.py

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extract_hairpins.py

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format_results.py

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full_pipeline.py

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predict.py

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remove_labels.py

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split_fasta.py

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test_file.py

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