jrderuiter

pybiomart

A simple pythonic interface to biomart.

airflow-fs

Composable filesystem hooks and operators for Apache Airflow.

snakemake-rnaseq

RNA-seq workflow for Snakemake based on STAR and featureCounts.

snakemake-cnvseq

Snakemake workflow for processing CNV-seq data.

snakemake-exome

Snakemake workflow for processing exome data.

production-ready-ml

code-breakfast-vertex-ai

Code breakfast focusing on Vertex AI.

dacite-config

Helpers for creating typed, IDE-friendly configs in Python using dataclasses and `dacite`.

code-breakfast-productionizing

heos

Python library for interacting with HEOS multi-room speakers.

jupyterlab-vscode

Docker image with JupyterLab + VSCode Server for browser-based editing.

openvscode-python

Small example of a Docker container that clones a Python repo and exposes it in openvscode-server.

snakemake-pdx-exome

Snakemake workflow for processing pdx exome data.

airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

airflow-training-skeleton

Skeleton project for Apache Airflow training participants to work on.

azureml-package-example

Example of using Python packages with Azure ML.

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

cookiecutter-pypackage

Cookiecutter template for a Python package.

custom-images

Tools for creating Dataproc custom images

de-python-hackathon

docker-airflow-codeserver

Docker compose setup with both Airflow + code-server.

heos-remote

Control HEOS-powered speakers using a physical (bluetooth) remote.

jupyterhub

minikube

Run Kubernetes locally

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

penguins

pipelines-python-django

Sample Python Django application for Azure Pipelines docs

structurizr-themes

vertex-workbench-vscode

Custom VM image for Vertex Workbench with OpenVSCode, Pyenv and Poetry.

whirl

Fast iterative local development and testing of Apache Airflow workflows