Beast code in Giters

Jonathan Polonsky's starred repositories

mortality_small_area_estimation

Generic and country-specific input files and R scripts for small area estimation of excess mortality in crisis settings

Language:R200

mortality_capture_recapture_analysis

Generic R scripts for data cleaning, descriptive analysis and implementation of two-, three- or four-list capture-recapture analysis, applied here to estimate total deaths from multiple lists generated by community informants.

Language:R100

dataviz

A book covering the fundamentals of data visualization

Language:HTMLNOASSERTION311600

chart-doctor

Sample files to accompany the FT's Chart Doctor column

Language:HTMLMIT299400

followup

Evidence based prioritisation of contacts to follow-up during infectious disease outbreaks

Language:RNOASSERTION300

R0-methods-comparison

A comparative analysis of statistical methods to estimate the reproduction number in emerging epidemics https://doi.org/10.1093/cid/ciaa1599

Language:R400

covid-19-npis

Data and models on nonpharmaceutical interventions against COVID-19 in 41 countries

CC-BY-4.0600

tidyverse

Introduction à R et au tidyverse

Language:SCSSNOASSERTION4500

surveys

Survey templates (WIP)

100

outbreaks

Repository to gather/develop code for outbreak anlyses

MIT300

master-the-tidyverse

Course contents for Master the Tidyverse

NOASSERTION15500

reportfactory

Lightweight infrastructure to handle multiple rmarkdown reports

Language:RNOASSERTION8200

webinars

Code and slides for RStudio webinars

Language:HTML152500

tv_course

data processing with R tidyverse

Language:CSS700

geoExploreR

dashboard to visualise geographic data

Language:RApache-2.01900

rocker

R configurations for Docker

Language:ShellGPL-2.0144200

recontools

Tools to develop RECON packages

Language:RGPL-3.0100

perceptions

Perceptions of Probability and Numbers

Language:RMIT80400

CriticMarkup-toolkit

Various tools to use CriticMarkup in your daily workflow

Language:Python71900

GeospatialLineGraphs

A library for creating geospatial line graphs along lines of latitude.

Language:RMIT6200

RPackage

Materials for writing an R Package

Language:R8300

thematic-maps-ggplot2

Beautiful thematic maps with ggplot2 (only)

Language:R9600

rep-res-course

Materials for a class on reproducible research with R, Rstudio, and GitHub

Language:Shell4500

styles

Official repository for Citation Style Language (CSL) citation styles.

Language:Ruby322700

efficientR

Efficient R programming: a book

Language:TeXNOASSERTION71800

RMarkdown_May11_2016

Workshop lesson for "Dynamic documents with RMarkdown and Knitr" that was hosted on May 11th, 2016 through the Data Intensive Biology Training Program.

Language:HTMLCC0-1.01400

tidy-text-mining

Manuscript of the book "Tidy Text Mining with R" by Julia Silge and David Robinson

Language:TeXNOASSERTION130700

samples-rmarkdown-metropolis

RMarkdown with Metropolis/Mtheme for Beamer

Language:Makefile5100

shinysurveillance

Shiny app to tune and select parameters for the different surveillance algorithms.

Language:RMIT600

radiant

Business analytics using R and Shiny. The radiant app combines the menus from radiant.data, radiant.design, radiant.basics, radiant.model, and radiant.multivariate.

Language:HTMLNOASSERTION45200