Jura Pintar's repositories
scUTRquant
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
GPL-3.0000
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
BSD-3-Clause000
scanpy
Single-cell analysis in Python. Scales to >1M cells.
BSD-3-Clause000
countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
MIT000
cugraph
cuGraph - RAPIDS Graph Analytics Library
Language:CudaApache-2.0000
infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Language:PythonBSD-3-Clause000
rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Language:Jupyter NotebookMIT000
unicode-math
Package for using unicode/OpenType maths fonts in XeLaTeX & LuaLaTeX
Language:TeX000