jpinero

Geno4SD

An python omics data toolkit for the analysis across biological scales

food-network

Neo4j network of information about recipes and ingredients (h/t Rik Van Bruggen and Yong-Yeol Ahn)

ISMB-2023-Neo4j-workshop

Repository to support the 2023 ISMB Neo4j workshop

knowalk

Algorithm that produces embeddings out of a knowledge graph based on biased random walker from user specific weights. The algoritm runs in parallel on multiple cpu, by default n of cpus of the machine -1.

GNorm2

toxhub-python

Python library to interface with eTransafe ToxHub services

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

SIDER4

Processing SIDER 4.1: the side effect resource

toolbox

Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)