jpfeil

hydra

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

Bios8366

Advanced Statistical Computing at Vanderbilt University's Department of Biostatistics

bnpy

Bayesian nonparametric machine learning for Python

cmdstan

deuflix

dilated-attention-pytorch

(Unofficial) Implementation of dilated attention from "LongNet: Scaling Transformers to 1,000,000,000 Tokens" (https://arxiv.org/abs/2307.02486)

dockernator

This project contains my Dockerfiles for the tool used in the pimmuno project

DP_GP_cluster

fusion-1

gpu-docker

hydra-paper

ib_insync

Python sync/async framework for Interactive Brokers API

image-analysis

magvit2-pytorch

Implementation of MagViT2 Tokenizer in Pytorch

MoVQGAN

MoVQGAN - model for the image encoding and reconstruction

pyrwrapper

qsmooth

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

rnaseq-recompute-analysis

Analysis of RNA-seq recompute expression data

rstudio-docker

strander

taux-manuscript

tauX manuscript code

toil_docker_wrappers

toolbox

random scripts

torchscale

Foundation Architecture for (M)LLMs

Transgene

This is a repository to host the transgene tool. Transgene takes a snpeffed vcf and a peptide fasta , and returns 3 peptide fastas containing 9-, 10- and 15-mers harboring the called mutations

typhon

varscan2

Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2

wambam

Workshop-2018