Beast code in Giters

Javier Perales-Paton's repositories

footprints

Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"

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DDR_shRNA_screening

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Adv_aging

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bioconda-recipes

Conda recipes for the bioconda channel.

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CLUE

Set of scripts to handle CLUE CMAP tools

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CorRNAprot

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env

Environment settings and documentation

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vulcanspot

a tool to prioritize therapeutic vulnerabilities in cancer

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data_KuppeIbrahim2020

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datasharing

The Leek group guide to data sharing

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gtc2vcf

Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL files to VCF

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HPDE_indKRASG12D

Extraction of an oncogenic signature of KRAS p.G12D for HPDE cells (GSE58055)

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ISLR

Student Solutions to An Introduction to Statistical Learning with Applications in R

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jperales.github.com

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KneeArrower

R package to find cutoff points on knee curves

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medgen-mysql

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prepare_CCLE

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RNAseq_analysis

Useful pipeline parts and functions for RNAseq analysis.

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SaDGcurve

Saturation Curve for detected Genes in RNAseq

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seurat

R toolkit for single cell genomics

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seurat_wrapper_kidney

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SPEED2vPROGENy

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stat-learning

Notes and exercise attempts for "An Introduction to Statistical Learning"

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TerminalImageViewer

Small C++ program to display images in a (modern) terminal using RGB ANSI codes and unicode block graphics characters

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WEx_analysis

Whole-Exome analysis tools

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