John Palmer's repositories
FluViewer
Tool for generating influenza A virus genome sequences from FASTQ data
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
auto-hcv
Automated genomic analysis of HCV sequence data
bioconda-recipes
Conda recipes for the bioconda channel.
fluflo
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
virscan-toolkit
A collection of scripts attempting to detect and flag cross-reactive peptide hits from VirScan PhIP-Seq outputs.
genbank-date-parser
Simple Python date parser. Intended for phylogenetic tree dating, such as with LSD2 in IQTree.
jpalmer37
Config files for my GitHub profile.
sm_indelrates
Data and scripts used for HIV-1 group M indel rate estimation project
Roary
Rapid large-scale prokaryote pan genome analysis
ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
uofthacks
Our submission for UofT Hacks 2021.