joshuashen

public_html

scripts

dotfiles

.files

fermi

Yet another de novo assembler based on the FM-index

aloft

ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

atlas-snp

Automatically exported from code.google.com/p/atlas-snp

BayesDB

A Bayesian database for querying the probable implications of data as easily as SQL databases query the data itself

bgt

Flexible genotype query among 30,000+ samples whole-genome

bioawk

BWK awk modified for biological data

breast_cancer_panel

Breast Cancer Study

BSMS205_2019Spring

BSMS205 Genetics - 2019 Spring

CANOES

fork this to get a repo with only a gh-pages branch that is easy to edit

cbioportal

d3

A JavaScript visualization library for HTML and SVG.

exac_browser

Browser for ExAC consortium data

gcn

Implementation of Graph Convolutional Networks in TensorFlow

gqt

A genotype query interface.

gxbrowser

BRI Gene Browser for integrating Microarray, RNA-seq data, expression data with demographic and clinical information

lof

LoF

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

manta

Structural variant and indel caller for mapped sequencing data

Missense-DNN

DNN for classifying functional consequence of missense genetic mutations using an ensemble of other scoring methods

MutationClusterVisualization

PSAP-pipeline

rafalib

ResearchKit

ResearchKit is an open source software framework that makes it easy to create apps for medical research or for other research projects.

rHealthDataGov

This package provides an R interface to the HealthData.gov data API.

steady

Best-practice pipelines for fully automated high throughput sequencing analysis

VariantFilterScripts

whisper

Robust Speech Recognition via Large-Scale Weak Supervision

xlsx2csv

Convert xslx to csv, it is fast, and works for huge xlsx files