joshuailevy

RUN-WW

Code and Wiki for Wastewater Surveillance

ww-dash

ww-dash-backend

activityQuantifier

Calculation of anticipatory statistics for fly activity data. Output is a combination of data types, some obtained using a fit to averaged data and others calculated on a per fly basis.

bioconda-recipes

Conda recipes for the bioconda channel.

creid-tutorial

EpiEstim

A tool to estimate time varying instantaneous reproduction number during epidemics

Freyja-SRA

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

joshuailevy.github.io

Personal Website

outbreak.info

During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.

pango-designation

Repository for suggesting new lineages that should be added to the current scheme

SD-Freyja-Outputs

WW_SD_Variants