Joshua Gould's repositories
canvas2pdf
Export your HTML canvas to PDF
OpenSeadragonCanvasOverlayHd
An OpenSeadragon plugin that adds canvas overlay capability in HD and supports multi-images.
cellphonedb-chord
Draw a chord diagram from cellphonedb output
scatter-gl
Interactive 3D / 2D webgl-accelerated scatter plot point renderer
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
bioio
Image reading, metadata management, and image writing for Microscopy images in Python
bioio-ome-zarr
A BioIO reader plugin for reading Zarr files in the OME format.
centrosome
An open source image processing library
dask
Parallel computing with task scheduling
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
OpticalPooledScreens
Code and examples for optical pooled screens (updated protocol).
bioio-czi
A BioIO reader plugin for reading CZI files.
bioio-nd2
A BioIO reader plugin for reading ND2 images.
bioio-tifffile
A BioIO reader plugin for reading TIFFs using Tifffile
dask-image
Distributed image processing
dask_relabeling
A relabeling tool for tiled segmentation with Dask
imreg_dft
Image registration using discrete Fourier transform.
miniwdl-omics-run
WDL launcher for AWS HealthOmics
multiview-stitcher
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
napari
napari: a fast, interactive, multi-dimensional image viewer for python
probreg
Python package for point cloud registration using probabilistic model (Coherent Point Drift, GMMReg, SVR, GMMTree, FilterReg, Bayesian CPD)
winstanley
An IntelliJ Plug-in for WDL
xarray
N-D labeled arrays and datasets in Python