Beast code in Giters

Michael Joseph's repositories

SDC-BIDS-dMRI

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air-tigrs

Orchestration tools for TIGRLab's data management infrastructure

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aroma

ICA-AROMA, as a Python package. A work in progress.

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datman

scripts for managing xnat, QC, and data analysis

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dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

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niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

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sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

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book

Sources for the DataLad handbook

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dashboard

tigrlab dashboard development

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Dcm2Bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

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DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

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