Joseph Halstead's repositories
challenge-200
Code to solve Daily Programmer Puzzle #200
django-role-permissions
A django app for role based permissions.
germline-enrichment-snakemake
Germline Enrichment pipeline using GATK and snakemake
Image-Analysis-Project
Liverpool Image Analysis
insilico_limit_of_detection
Downsample a BAM file and see if a variant can still be called.
Soduku-Solver
A soduku solver written in Python
Westminster-Tweet-Analysis
An analysis of how British MPs use Twitter
mane_flat
Parse a GFF of MANE transcripts into a flat file
Language:Jupyter Notebook000
nextflow_small_germline_panel
An example nextflow pipeline for calling short variants in germline enrichment samples
VariantDatabase
A Django Database for holding genetic variants
vep_annotation_ruffus
A small script for annotating vcfs using VEP. Uses Ruffus.