jordangumm

metago

Experimental metagenomic workflow

autodrep

simple dRep runner wrapper script with automated dependency build

Anaquin

Statistical analysis of sequins in C++ and R

arg_identifier

A workflow that accelerates RGI ARG-like sequence identification

argraph

graph database to facilitate analysis and comparison of ARG databases and metagenomic calls

autofizkin

Fizkin fork optimized for performance and easy integration into automated runs

automaxout

A Python library for automatically training a Maxout Network

boxfer

Python Click-based CLI for transferring to and from Box accounts

crepe

CREPE: A Convolutional REpresentation for Pitch Estimation -- pre-trained model (ICASSP 2018)

pyflux

A pyFlow extension for automated scientific workflows on the Flux cluster

fasth

FAST Heuristics for querying fasta/fastq files

kaggle_mania

March Mania Machine Learning Experiments

MARVEL

MARVEL: Metagenomic Analyses and Retrieval of Viral ELements

merge_columns_backend

metago_demo

NeuralNetworkExperiments

Markdown Neural Network (NN) tutorials created for learning purposes. They could be beneficial for those wishing to learn about NN.

NNTutorials

Neural Network Tutorials

nucompress

A python library for dynamic genomic sequence compression

omics_16s

Base workflow for setting up OTU analysis from Illumina fastq(s)

para_dtwostar

Parallel d2* Wrapper of VirHostMatcher

pyflow

A lightweight parallel task engine

pyleup

A python tool for creating static visualizations of NGS reference read pileups

rgi

Resistance Gene Identifier (RGI)

singularity_recipes

slurm_test

configuration files for slurm cluster testing grounds

SuPyLearner

An implementation of the SuperLearner algorithm in Python based on scikit-learn.

textbook_learning

A collection of Jupyter notebooks that follow my learning from textbooks

UbiquitousHealthPromotion

A potential research avenue prompted by observations in a literature review conducted in Ubiquitous Computing course at CMU

utils

A place to keep some scripts I routinely use

web_terminal

A base terminal application that can easily be extended