Joon An's repositories
BSMS205_2021Spring
BSMS205 Genetics
blotter
bedford lab research
Cancer_notes
A continually expanding collection of cancer genomics notes and data
dsbook
Repository for data science book
Genc2020_RNAseq
Analysis codes for Genc et al. 2020
GeneBERT
A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, predicting differential gene expression from histone modifications.
hail
Scalable genomic data analysis.
HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
janggu
Deep learning infrastructure for bioinformatics
MIND
Using Multiple Measurements of Tissue to Estimate Individual- And Cell-Type-Specific Gene Expression via Deconvolution
play-with-docker
You know it, you use it, now it's time to improve it. PWD!.
the-art-of-command-line
Master the command line, in one page
xCell
Cell types enrichment analysis