Jonathan Newman's repositories
learn-migen
migen tutorials, etc
public-presentations
My public presentations
TeensyStep
Fast Stepper Motor Library for Teensy boards
analysis-tools
Code for analyzing data saved by the Open Ephys GUI
Bonsai.PointGrey2
Bonsai PointGrey package with extra features
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
cpp.react
C++React: A reactive programming library for C++11.
CSI2Rx
Open Source 4k CSI-2 Rx core for Xilinx FPGAs
DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals including humans
diff-probe
An almost GHz differential probe
eln
Electronic Lab Notebook
FFTWSharp
C# wrapper for FFTW
Kalman-Filter
WIP: Kalman Filter + visualizations + enclosure
KiloSort
GPU code for spike sorting
learn-pages
Learn how to use github pages.
LighthouseRedox
Lighthouse Reverse-Engineered Documentation
microstim
Breadboard friendly neural stimulator module
Miniscope_CMOS_Imaging_Sensor_PCB
Design, fabrication, and assembly files for CMOS imaging sensor PCB
Miniscope_DAQ_Firmware
Source code and firmware image
Miniscope_DAQ_PCB
Design, fabrication, and assembly files for the Miniscope DAQ PCB
Miniscope_Excitation_LED_PCB
Design, fabrication, and assembly files for excitation LED PCB
Miniscope_Machined_Parts
Design files for all machined parts of the Miniscope system.
mwlconv
File conversion tools for the MWL@MIT
open-instruments-core
Core open instruments API
riffa
The RIFFA development repository
tenss_spike_pipeline_tutorial
minimal spike extraction and sorting