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jondeans

jondeans

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Company:Veracyte

Location:Solvang, CA

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jondeans's starred repositories

pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

Language:PythonLicense:BSD-3-ClauseStargazers:300Issues:0Issues:0

rnaseqc

Fast, efficient RNA-Seq metrics for quality control and process optimization

Language:C++License:NOASSERTIONStargazers:144Issues:0Issues:0

gos

A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.

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premier-league

A Data Engineering project. Repository for backend infrastructure and Streamlit app files for a Premier League Dashboard.

Language:PythonStargazers:172Issues:0Issues:0

pytest

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

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pydantic

Data validation using Python type hints

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TopoEmbedX

Representation Learning on Topological Domains

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transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

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stellargraph

StellarGraph - Machine Learning on Graphs

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single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

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dotfiles

My lovely dots ~/.💖

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starship

☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!

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nba_py

Python client for NBA statistics located at stats.nba.com

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packager

Generate an addon zip file from a Git, SVN, or Mercurial checkout.

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HyperNetX

Python package for hypergraph analysis and visualization.

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glances

Glances an Eye on your system. A top/htop alternative for GNU/Linux, BSD, Mac OS and Windows operating systems.

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map4

The MinHashed Atom Pair fingerprint of radius 2

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tmap

A very fast visualization library for large, high-dimensional data sets.

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torchdrug

A powerful and flexible machine learning platform for drug discovery

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python-colorlog

A colored formatter for the python logging module

Language:PythonLicense:MITStargazers:870Issues:0Issues:0

rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

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scalene

Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python

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python-patterns

A collection of design patterns/idioms in Python

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bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

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pykeen

🤖 A Python library for learning and evaluating knowledge graph embeddings

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NBFNet

Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

Language:PythonLicense:MITStargazers:195Issues:0Issues:0

matplotlib-venn

Area-weighted venn-diagrams for Python/matplotlib

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human-phenotype-ontology

Ontology for the description of human clinical features

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genetics-gold-standards

GWAS gold standards repository

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resources-example

An example project demonstrating how to access data files in Python package

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