Jonathan Cummings's repositories
Covid_Event_Risk
Calculation of the risk of a coronavirus transmission event occur due an in-person gathering
fluke-mafmc-recdisc
Code for runnning analyses for the 2021 MAFMC Summer Flounder MSE focused on recreational discards
Fluke-MSE-simulation
Management model for the fluke MSE
GfishCo-occur
Determining groundfish spatial co-occurrence to predict catch co-occurrence
hello-world
First repository
lab-manual
lab manual / how we work
labhub
Fay Labhub site. (Forked from apreshill/labhub - OHSU Open Science Workshop on tools and methods for building transparency within a lab)
LynxEE
This repository contains data and code to process the results of the October 13-15 Lnyx expert elicitation workshop. The input data are the responses collected in response to the questions asked of the expert panel at the workshop. See the Canada Lynx Expert Elicitation Workshop Report (https://www.fws.gov/mountain-prairie/es/species/mammals/lynx/SSA2016/Appendices/2016%2004%2018%20FINAL%20Lynx%20SSA%20EE%20Workshop%20Report%202%20jzeds.pdf) for a description of the workshop and the questions asked.
mafmc-fluke-datathon
UMassD datathon to explore the responses to MAFMC Jan 2021 MSE summer flounder stakeholder survey
MS-SCAA
Multispecies statistical-catch-at-age model
MSEreview
Review of MSE process documentation
nimble-TWS-workshop
Content for NIMBLE workshop at TWS conference, Fall 2019.
quantfishR_06_dataViz
woRkshop on using ggplot2 to create data visualizations
quantfishR_07_shiny
Materials for the March 5, 2019 quantfishR workshop on Shiny apps
ShinyWithStorage
A repository to store my learning about how to link shiny apps with storage
SomeCovidAnalyses
My personal exploration of various COVID-19 data sets
Species_Classification
Addressing species classification from a decision analysis perspective.
Summer-Flounder-MSE
An MSE which will evaluate different management strategies designed to minimize discards in the recreational summer flounder fishery. Development of this MSE is part of the continued implementation of the Council’s Ecosystem Approach to Fisheries Management (EAFM) structured framework process.
svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
TM_TaxCalc
Calculates the tax burden from town meetings day articles