Jonas Freimuth's repositories
BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
easy-entrez
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
TCGAWorkflow
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
pigx_sars-cov-2
PiGx SARS-CoV-2 wastewater sequencing pipeline
jonasfreimuth
Config files for my GitHub profile.
sudo
Mattermost bot
pigx_docs
Documentation for PiGx
pigx-common
Common infrastructure used by all PiGx pipelines
intro2UnixandSGE
resource for unix and SGE beginners
pigx-databases
Small database archives used for testing by the pigx-sars-cov-2 pipeline. May disappear at any point.
deconvR
The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.
guix.install
Install (and import) R packages with Guix from within your R session
AdventOfCode21
My sporadic attempts to participate in https://adventofcode.com/2021/...