jojoelfe

deco_lace_template_matching_manuscript

The manuscript describing Defocus Corrected Large Area cryo-EM (DeCo-LACE) for 2DTM

contrasttransferfunction

A python library to model and estimate the contrast transfer function of transmission electron microscopy data

decolace

Scripts for acquiring DeCo-LACE data using SerialEM

napari-cistem

A napari plugin to inspect data within a cisTEM project

tempest

A ChimeraX plugin to visualize high-resolution template matching results from cisTEM

napari-decolace

pycistem

Python scripts inteacting with the cisTEM package

affinder-drag

Quickly find the affine matrix mapping one image to another using manual correspondence points annotation

cisTEM

gcc-problem-matcher

Github Action to problem match gcc output

cryoem-class

A test repository for a cryo-em class

cryojax

Cryo electron microscopy image simulation and analysis built on JAX.

decolace_web_viewer

dsn6file

imodmodel

IMOD model files as pandas dataframes in Python

jojoelfe.github.io

jupyter-book

Build interactive, publication-quality documents from Jupyter Notebooks

mdocfile

SerialEM mdoc files as pandas dataframes

MolecularNodes

Addon and nodes for working with structural biology and molecular data in Blender.

molintjs

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-cistem-mtselector

napari-cryofibsem-monitor

A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument

necem2023

ohsu_seminar

pcdh15_tomo_talk

posters

readlif

Fast Leica LIF file reader written in python

starfile

RELION STAR files as pandas DataFrames

webgl-ctf