johnmous

Tangram

Spatial alignment of single cell transcriptomic data.

yolov9

Implementation of paper - YOLOv9: Learning What You Want to Learn Using Programmable Gradient Information

turtle

[ICML 2024] Let Go of Your Labels with Unsupervised Transfer

cPredictor

This repository defines a command-line tool predictor (cPredictor) based on single-cell RNA sequencing data.

kernel_tuner

Kernel Tuner

eacl2024_transformer_interpretability_tutorial

Materials for EACL2024 tutorial: Transformer-specific Interpretability

vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference

exonviz

llama_index

LlamaIndex is a data framework for your LLM applications

dash-uploader

The alternative upload component for python Dash applications.

PDF_Text_Extraction

scVI_comparison_Seurat_LUMC

Baysor

Bayesian Segmentation of Spatial Transcriptomics Data

llm-applications

A comprehensive guide to building RAG-based LLM applications for production.

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

squidpy

Spatial Single Cell Analysis in Python

spatialdata

An open and interoperable data framework for spatial omics data

napari-spatialdata

Interactive visualization of spatial omics data

VIBE

VIBE package

NaLLM

Repository for the NaLLM project

Data-Science-Interview-Questions-Answers

Curated list of data science interview questions and answers

sceasy

A package to help convert different single-cell data formats to each other

OvoGrowth-dataprocessor

MSI-self-supervised-clustering

Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.

magic-wormhole

get things from one computer to another, safely

dolly

Databricks’ Dolly, a large language model trained on the Databricks Machine Learning Platform

scgen

Single cell perturbation prediction

SCING

SCING: Single Cell INtegrative Gene regulatory network inference

stanford-cs-229-machine-learning

VIP cheatsheets for Stanford's CS 229 Machine Learning

atac-seq-pipeline

ENCODE ATAC-seq pipeline