johnmous

scgen

Single cell perturbation prediction

SCING

SCING: Single Cell INtegrative Gene regulatory network inference

stanford-cs-229-machine-learning

VIP cheatsheets for Stanford's CS 229 Machine Learning

atac-seq-pipeline

ENCODE ATAC-seq pipeline

ShinyCell

Shiny Interactive Web Apps for Single-Cell Data

DevKidCC

Package to classify kidney cells within single cell RNA sequencing data

KeyGenes

anndata

Annotated data.

HGDA

scDblFinder

Methods for detecting doublets in single-cell sequencing data

dgeAnalysis

R package with Shiny application for DGE analysis

sc-SHC

Significance analysis for clustering single-cell RNA-sequencing data

aneuploidy_scrnaseq

Detection of aneuploidy using scRNA-seq data from human embryos.

nvitop

An interactive NVIDIA-GPU process viewer and beyond, the one-stop solution for GPU process management.

phiclust

A clusterability measure for scRNA-seq data.

sfaira_tutorials

MGC-BioSB-SingleCellAnalysis2021

tasks

A collection of reusable WDL tasks. Category:Other

scHPL

DE-analysis

Libra

SIGMA

R package for SIGMA, a clusterability measure for scRNA-seq data

scRNAseq_Benchmark

Bench-marking classification tools for scRNA-seq data

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

gut_lineage

scarches

Reference mapping for single-cell genomics

HLCA

cellrank

CellRank: dynamics from multi-view single-cell data

sfaira

data and model repository for single-cell data

VeTra