John 's repositories
automated_dwiQC
Scripts to generate automated QC scores, based on criteria from the 2019 TIGRlab DWI working group
binorg_decoding
Bin-Organized Decoding (edit Bae&Luck, 2018).
dwi_preprocessing
dwi preprocessing
DTI-NODDI
:brain: DTI-NODDI: Create NODDI maps from DTI (either "FA and MD" or "L1, L2, and L3")
FastSurfer
PyTorch implementation of FastSurferCNN
H_Nakua_cca_pls_comparison_ABCD
This repository contains the scripts used in the manuscript titled "Comparing the stability and reproducibility of brain-behaviour relationships found in Canonical Correlation Analysis and Partial Least Squares within the ABCD sample"
hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
lab-manual
Lab manual for the Contextual Dynamics Laboratory at Dartmouth College
LaPreprint
📝 A nicely formatted LaTeX preprint template
mMSE
Code & short tutorial for modified multi-scale entropy analysis
myPLS
myPLS toolbox - PLS analysis for medical image processing
neuroHarmonize
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images! Complements the work in Neuroimage by Pomponio et al. (2019).
neuropower-core
This repository contains the core functions from neuropower in a python package.
PredictPRoNTo
Predict using the PRoNTo toolbox. Supports both regression and classification, and different predictive models.
pyls
A Python implementation of Partial Least Squares (PLS) decomposition
science_project_template
template for science file organization
spm_superres
Super-resolution of multimodal clinical magnetic resonance images (MRIs)
suit
Toolbox for the analysis of cerebellar imaging data
zotero-mdnotes
A Zotero plugin to export item metadata and notes as markdown files