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Johan Dahlberg (johandahlberg)

johandahlberg

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Company:Working at Pixelgen Technologies

Location:Uppsala

Home Page:http://uppsala-bioinformatics.se/

Twitter:@genomicsdev

Github PK Tool:Github PK Tool

Johan Dahlberg's starred repositories

needletail

Fast FASTX parsing and k-mer methods in Rust

Language:RustLicense:MITStargazers:164Issues:0Issues:0

rust-bfield

B-field implementation in Rust

Language:RustLicense:Apache-2.0Stargazers:198Issues:0Issues:0

pixelator

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.

Language:PythonLicense:MITStargazers:12Issues:0Issues:0

pixelatorR

Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)

Language:RLicense:GPL-2.0Stargazers:7Issues:0Issues:0

fqtk

Fast FASTQ sample demultiplexing in Rust.

Language:RustLicense:MITStargazers:51Issues:0Issues:0

incubator-graphar

An open source, standard data file format for graph data storage and retrieval.

Language:C++License:Apache-2.0Stargazers:189Issues:0Issues:0

cudf

cuDF - GPU DataFrame Library

Language:C++License:Apache-2.0Stargazers:7949Issues:0Issues:0

graphblas-algorithms

Graph algorithms written in GraphBLAS

Language:PythonLicense:Apache-2.0Stargazers:68Issues:0Issues:0

graspologic

Python package for graph statistics

Language:PythonLicense:MITStargazers:599Issues:0Issues:0

prefect

Prefect is a workflow orchestration tool empowering developers to build, observe, and react to data pipelines

Language:PythonLicense:Apache-2.0Stargazers:15289Issues:0Issues:0

pixelator

Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)

Language:NextflowLicense:MITStargazers:6Issues:0Issues:0

TopoNetX

Computing on Topological Domains

Language:Jupyter NotebookLicense:MITStargazers:165Issues:0Issues:0

anndata

Annotated data.

Language:PythonLicense:BSD-3-ClauseStargazers:519Issues:0Issues:0

cugraph

cuGraph - RAPIDS Graph Analytics Library

Language:CudaLicense:Apache-2.0Stargazers:1620Issues:0Issues:0

NetComp

Comparative metrics for dynamic networks in Python

Language:Jupyter NotebookLicense:MITStargazers:66Issues:0Issues:0

cookiecutter-scverse

Cookiecutter template for scverse

Language:PythonLicense:BSD-3-ClauseStargazers:66Issues:0Issues:0

rocketry

Modern scheduling library for Python

Language:PythonLicense:MITStargazers:3215Issues:0Issues:0

act

Run your GitHub Actions locally 🚀

Language:GoLicense:MITStargazers:51800Issues:0Issues:0

electricShine

Create Standalone Installable Shiny Apps

Language:RLicense:NOASSERTIONStargazers:253Issues:0Issues:0

django-migration-linter

:rocket: Detect backward incompatible migrations for your django project

Language:PythonLicense:Apache-2.0Stargazers:514Issues:0Issues:0

django-environ

Django-environ allows you to utilize 12factor inspired environment variables to configure your Django application.

Language:PythonLicense:MITStargazers:2955Issues:0Issues:0

great_expectations

Always know what to expect from your data.

Language:PythonLicense:Apache-2.0Stargazers:9622Issues:0Issues:0

django-docker-template

A Django project template for a RESTful Application using Docker

Language:PythonLicense:MITStargazers:82Issues:0Issues:0

gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

Language:RustLicense:MITStargazers:55Issues:0Issues:0

cdk8s

Define Kubernetes native apps and abstractions using object-oriented programming

Language:JavaScriptLicense:Apache-2.0Stargazers:4201Issues:0Issues:0

pridepy

Python client for PRIDE Archive Rest API.

Language:PythonLicense:Apache-2.0Stargazers:14Issues:0Issues:0

awesome-code-review

An "Awesome" list of code review resources - articles, papers, tools, etc

Stargazers:4259Issues:0Issues:0

localstack

💻 A fully functional local AWS cloud stack. Develop and test your cloud & Serverless apps offline

Language:PythonLicense:NOASSERTIONStargazers:52837Issues:0Issues:0

awesome-sequencing-tech-papers

A collection of publications on comparison of high-throughput sequencing technologies.

Stargazers:26Issues:0Issues:0

clarity-ext

Extensions for Clarity

Language:PythonStargazers:6Issues:0Issues:0