joergen7

Jörgen Brandt's repositories

gruff

A basic worker pool manager for Erlang to showcase gen_pnet.

Language:ErlangApache-2.023 30

lib_combin

Basic combinatorics for Erlang lists.

Language:ErlangApache-2.06 30

lib_dp

Dynamic Programming in Erlang.

Language:ErlangApache-2.05 30

cuneiform-legacy

A Functional Workflow Language

Language:JavaApache-2.0400

chef-bioinf-worker

Chef cookbook to set up worker node for various bioinformatics workflows

Language:RubyApache-2.03 30

gen_workflow

A behavior for specifying data analysis applications in Erlang.

Language:ErlangApache-2.0300

cf-java

Java bindings for Cuneiform

Language:JavaApache-2.02 30

cf_lang

Standalone Cuneiform interpreter

Language:ErlangApache-2.02 30

cfui

Cuneiform Workflow Management Portal

Language:PythonApache-2.0200

bsmooth-align

Alignment of bisulfite sequence reads and tabulation of read-level methylation measurements

Language:C++GPL-3.0100

cf-model

Model implementation of Cuneiform in Erlang

Language:ErlangApache-2.0100

chef-misc

Miscellaneous Chef cookbooks

Language:RubyApache-2.0100

consensus-prediction

A consensus prediction workflow for MS data

Language:HTMLApache-2.0100

cuneiform_irc

A Cuneiform IRC chatterbot.

Language:ErlangApache-2.0100

gccount

Counting the GC content in a given FastA file

Language:RubyApache-2.0100

gruff_example

An example application using gruff.

Language:ErlangApache-2.01 30

metagenomics

A metagenomics workflow

Language:RubyApache-2.0100

mirna-discovery

miRNA discovery workflow

Language:RubyApache-2.0100

variant-call-gatk

Germline variant calling workflow using GATK

Language:HTMLApache-2.0100

variant_call_rna

Variant calling on RNA-Seq data

Language:RubyApache-2.0100

eunit_formatters

Because eunit's output sucks. Let's make it better.

Apache-2.0000

mirdeep

A miRDeep workflow

Language:RubyApache-2.0000

opal

Opal - Optimized Applicative Language

NOASSERTION000