phylogeny workflow for CHASE domain in plant proteomes
This workflow performs a phylogenetic study of the CHASE domain, a protein domain resposible for cytokinin reception in the two-component system in late diverging plants. It is a reimplementation of a paper by Pils and Heyl 2009.
A detailed description can be found on the Cuneiform website. This cookbook installs all necessary tools, downloads all necessary data, sets up Cuneiform, and places the workflow in a predetermined location. The cookbook can be run on any system in a virtual machine. For running the cookbook natively, an Ubuntu 16.04 or higher is required.
Running the Workflow
If you set up the workflow via kitchen converge, log into the machine by typing
kitchen login
Execute the workflow script by entering
cuneiform -d /opt/data /opt/wf/phylogeny.cfl
Authors
- Jörgen Brandt (@joergen7) joergen@cuneiform-lang.org