Motifs missing when input sequence less than 400 bp
ziwei-75 opened this issue · comments
If the user doesn't set the -w option, Modisco-lite may produce different results compared to standard Modisco when the input sequence is less than 400 bp. It would be good for the program to automatically account for this scenario, either by raising an error or by using the provided sequence length.
v2.0.7 will raise an error if the window is longer than the sequence -- or, more specifically, if the extracted subsequences are not of the same size as the window.