Jacob Schreiber's repositories
pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
tangermeme
Biological sequence analysis for the modern age.
torchegranate
A temporary repository hosting a pomegranate re-write using PyTorch as the backend.
tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
bpnet-lite
This repository hosts a minimal version of a Python API for BPNet.
dragonnfruit
A method for analyzing scATAC-seq experiments.
constraint_graphs
Repository for the data and associated notebook for the manuscript "Finding the optimal Bayesian network given a constraint graph."
deep-learning-notes
Experiments with Deep Learning
gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
pomegranate_archive
This is an archive of pomegranate 0.14.8 before the PyTorch remake for posterity.
pomegranate_wheel_builder
A temporary repository to play around with building wheels for the notoriously popular and industry revolutionizing package 'pomegranate'
readthedocs.org
source code to readthedocs.org