Jason Moggridge's repositories
Labrador_ACL_rupture_GWAS
A tutorial script for genome-wide association analysis using Plink with an example dataset from a case-control study of ACL rupture in Labrador retrievers (Baker et al. 2017)
advent-of-code-2021
Advent of code 2021 in R or whatever I feel like
blast-from-command-line
blast a set of sequences against a set of references
Burbot-reference-guided-assembly
Analysis of burbot read-mapping to cod or burbot reference genomes with either `bwa` or `bowtie2`
Burbot-variant-calling
Calling genetic variants from Burbot genotyping by sequencing data using freebayes and bcftools
computational-reproducibility-in-r
forked from Nathaniel Haines
DNA-methylation-prediction
ML for predicting methylation status of CpG sites
ez_rentrez
Convenient functions for performing large queries to the NCBI api by wrapping the Rentrez package
fixed-and-random-effects
Slideshow for 10min talk about fixed and random effects in statistics
jmoggridge
Hi!
jmoggridge.github.io
my website
pandoc-nextjs-server
A simple web UI for Pandoc
Polychaeta-phylogeny
Maximum likelihood phylogeny and testing molecular models of evolution for cytochrome c oxidase subunit 1 sequences of Polynoidae from Barcode of Life Database
python-github-action-template
Schedule a Python script with GitHub Actions
sklearn_example_pipelines
SciKit learn support vector classifier and logistic regression classifer. Runs on cancer, abalone, and diabetes datasets
stats_analyses
Various analyses in R with tidyverse and (sometimes) tidymodels
substack_publisher_py
create a substack post using the python-substack api
TFmotif-counter
Python script to count the occurence of TF motifs in the promoter regions of genes of interest
tyrosine_recombinases_and_RIT_elements
Master's thesis work on tyrosine recombinases and recombinase-in-trio elements
webr-node-example
An example of running webR under node.